- MASc in Anatomical Science Education (with research paper)
- MSc in Biochemistry (with thesis)
- MSc in Biochemistry Specialization in Bioinformatics
- MSc in Biochemistry Specialization in Human and Molecular Genetics
- MSc in Biochemistry Specialization in Pathology and Experimental Medicine (Admissions are suspended until further notice)
- MSc in Cellular and Molecular Medicine (with thesis)
- MSc in Cellular and Molecular Medicine Specialization in Bioinformatics (Ottawa-Carleton Joint program)
- MSc in Cellular and Molecular Medicine Specialization in Pathology and Experimental Medicine (Admissions are suspended until further notice)
- MSc in Cellular and Molecular Medicine Specialization in Human and Molecular Genetics
- MSc in Epidemiology (with thesis or research project)
- MSc in Epidemiology Specialization in Biostatistics (Admissions are suspended until further notice)
- MSc in Microbiology and Immunology (with thesis)
- MSc in Microbiology and Immunology Specialization in Bioinformatics (Ottawa-Carleton Joint program)
- MSc in Microbiology and Immunology Specialization in Pathology and Experimental Medicine (Admissions are suspended until further notice)
- MSc in Neuroscience (with thesis)
- MSc in Neuroscience Specialization in Human and Molecular Genetics
- MSc in Neuroscience Specialization in Pathology and Experimental Medicine (Admissions are suspended until further notice)
Outstanding students enrolled in the MSc program may be allowed to fast-track to the PhD program without writing a master's thesis, provided they meet certain condition. These include maintaining and A- average during their graduate studies, and successful completion of all seminars and courses required for the MSc program.
